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nolanlab / vortex

VorteX Clustering Environment - Java graphical tool for single-cell analysis, clustering and visualization. Latest release:
https://github.com/nolanlab/vortex/releases
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Possible to scale all params when using a subset for clustering? #9

Open Andrew-InTheBox opened 6 years ago

Andrew-InTheBox commented 6 years ago

Hi, I'm running clustering where I'm only selecting a subset of parameters for clustering, but will import the others for display purposes only. I prefer to use the 'scale to SD option' on import for my data and notice that only clustering parameters get scaled. This makes the 'profiles' graph appear odd, since often the un-scaled parameters will have a range much larger than those that were scaled to one SD and thus the range of the Profiles graph is too large for most parameters.

Is it possible to add an option to 'scale all', including non-clustering parameters, to help with this issue?

Thanks.

nsamusik commented 6 years ago

Thanks! That's a good suggestion, I will implement it in the next release