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nomad-coe / nomad

NOMAD lets you manage and share your materials science data in a way that makes it truly useful to you, your group, and the community.
https://nomad-lab.eu
Apache License 2.0
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JOSS Review: Google Colab (Python 3.8) -- `Could not find a version that satisfies the requirement scipy==1.7.1` #69

Closed sgbaird closed 11 months ago

sgbaird commented 1 year ago

Colab Reproducer

Not really an issue since the documentation says to use Python 3.9, but I figured I'd mention it still.

!./scripts/setup_dev_env.sh
ERROR: Ignored the following versions that require a different python version: 1.0.1 Requires-Python >=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3,!=3.4.*,<3.9; 1.1.0 Requires-Python >=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,<3.9; 1.1.1 Requires-Python >=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,<3.9; 1.6.2 Requires-Python >=3.7,<3.10; 1.6.3 Requires-Python >=3.7,<3.10; 1.7.0 Requires-Python >=3.7,<3.10; 1.7.0rc1 Requires-Python >=3.7,<3.10; 1.7.0rc2 Requires-Python >=3.7,<3.10; 1.7.1 Requires-Python >=3.7,<3.10; 1.9.5 Requires-Python >=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, <3.7
ERROR: Could not find a version that satisfies the requirement scipy==1.7.1 (from versions: 0.8.0, 0.9.0, 0.10.0, 0.10.1, 0.11.0, 0.12.0, 0.12.1, 0.13.0, 0.13.1, 0.13.2, 0.13.3, 0.14.0, 0.14.1, 0.15.0, 0.15.1, 0.16.0, 0.16.1, 0.17.0, 0.17.1, 0.18.0, 0.18.1, 0.19.0, 0.19.1, 1.0.0, 1.0.1, 1.1.0, 1.2.0, 1.2.1, 1.2.2, 1.2.3, 1.3.0, 1.3.1, 1.3.2, 1.3.3, 1.4.0, 1.4.1, 1.5.0, 1.5.1, 1.5.2, 1.5.3, 1.5.4, 1.6.0, 1.6.1, 1.7.2, 1.7.3, 1.8.0rc1, 1.8.0rc2, 1.8.0rc3, 1.8.0rc4, 1.8.0, 1.8.1, 1.9.0rc1, 1.9.0rc2, 1.9.0rc3, 1.9.0, 1.9.1, 1.9.2, 1.9.3, 1.10.0rc1, 1.10.0rc2, 1.10.0, 1.10.1)
ERROR: No matching distribution found for scipy==1.7.1
markus1978 commented 1 year ago

As you said, not sure if this is an issue. We requiring 3.9 because some dependencies (and recently our own code) rely on it. Anyhow, we plan to wrap the setup_dev_env.sh and pip install nomad-lab use-cases into continuously run tasks on the CI/CD. Once this is done, I'll probably close this issue.

markus1978 commented 1 year ago

But even on a newer Colab with Python 3.10.x you still run into a view conflicts because Colab itselfs has some incompatible version requirements (e.g. on the requests library). We can test some more and hopefully provide a Colab solution. But #68 has to be solved first.

zhubonan commented 1 year ago

Just so GitHub knows - this is related to: https://github.com/openjournals/joss-reviews/issues/5388

markus1978 commented 11 months ago

We just released nomad-lab==1.2.0. This can also be installed on google colab. Here is an example notebook: https://colab.research.google.com/drive/1Zlf24eAxFiqtIGbp5NLm66vQR8QPt3AM?usp=sharing