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noporpoise / seq-align

Fast, portable C implementations of Needleman-Wunsch and Smith-Waterman sequence alignment
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Build dependencies #1

Closed ivan-krukov closed 11 years ago

ivan-krukov commented 11 years ago

Hello, Isaac. I would like to thank you for this project, it looks quite interesting and useful. However, I was not able to build it without some dependencies that you did not include in the repo. As far as I see, uthash.h string_buffer.h and utility_lib.h are missing. Please let me know if those are publicly available, i was not able to find them since the names are too generic. Also, Happy Holidays. Thanks.

ivan-krukov commented 11 years ago

I should apologize for being quite dense. Found everything I needed in your other repositories. Thanks a ton.

noporpoise commented 11 years ago

Hi Ivan,

Thanks for getting in touch. I realised its not very obvious what the dependencies are and how to get them - sorry about that. I've added an extra step to the build instructions in the README and added a new Makefile to fetch/compile them. In your repo, just do:

git pull cd libs make cd .. make

Hope that helps. Happy holidays,

Isaac