Annotation slice number

[longchingkwok331]

Hi, there a GUI for visualizing the scans and some meta information by using _scan.visualize(annotationgroups=nods)

However, is it possible to extract the information about the slice number of annotation e.g. nodule 1, near slice 25 how can I extract this information using the pulidc functions?

Thank you

[notmatthancock]

this example snippet might help:

import numpy as np
import pylidc

scan = pylidc.query(pylidc.Scan).first()
annotation_groups = scan.cluster_annotations()

for group in annotation_groups:
    print(np.mean([annotation.contour_slice_indices.mean() for annotation in group]))

# prints: 
# 25.375
# 46.5
# 47.5
# 67.625

You can also use the Annotation.centroid and Annotation.contours_matrix properties.

[longchingkwok331]

thank you very much