novoalab / EpiNano

Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)
GNU General Public License v2.0
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How to train the model with single feature, quality score #109

Closed arthasking123 closed 2 years ago

arthasking123 commented 2 years ago

I've read the 2019 paper's figure 2d, showing using single feature, the quality score can already train the model with high accuracy. However, I failed to find the procedure about how to train the model with this single feature. Could you please show me how to get the good accuracy with just one quality score feature? Also, in the download csv dataset, the quality values are all floats, however, if we transfer quality value directly from fastq files, the quality values are int. So how do you get the quality values? Thanks very much!

Huanle commented 2 years ago

Hi @arthasking123 , You can find some examples here.