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novoalab / EpiNano

Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)
GNU General Public License v2.0
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per 5mer output #110

Closed soniacruciani closed 2 years ago

soniacruciani commented 2 years ago

Hello, It seems that in Epinano 1.2 Epinano_Variants.py does not produce the sample.per_site.5mer.csv anymore, but only sample.per.site.var.csv. Is it possible to reintroduce the option to produce the per.5mer output? Is this a major reorganization of the code or it can be retrieved by an intermediate temp file that is anyway produced?

Thanks!

soniacruciani commented 2 years ago

never mind, found the answer in closed issues. thanks