per_read_var.stats.py script

novoalab / EpiNano

Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)

GNU General Public License v2.0

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per_read_var.stats.py script #12

Closed sdwien closed 5 years ago

sdwien commented 5 years ago

I cannot find the per_read_var.stats.py script that is used in step #5 of your workflow. Is it supposed to be in the /scripts subfolder of your repository? Or has it been renamed? Thanks and best, Sophia

Huanle commented 5 years ago

@sdwien Thanks for pointing that out. Yes, it's been renamed as 'per_read_var.py'. I will modifiy the example command.

sdwien commented 5 years ago

thank you! It works for me (up to this step at least...) now!