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novoalab / EpiNano

Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)
GNU General Public License v2.0
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Migrate to conda? #120

Closed katsikora closed 2 years ago

katsikora commented 2 years ago

Dear Team,

thanks for supplying this interesting and versatile tool. I was wondering if you would consider packaging it up for conda, which would make the installation of dependencies a far bit easier ?

Best regards, Katarzyna

enovoa commented 2 years ago

Hi @katsikora - thanks for the suggestion. To avoid installing dependencies, you may use epinano 1.2. from the docker image included here (https://github.com/novoalab/EpiNano/tree/master/dockerfile) or epinano 1.1 from MasterOfPores nextflow workflow (https://github.com/biocorecrg/master_of_pores). Thanks!

katsikora commented 2 years ago

Hi Enovoa,

thanks for your suggestion!

Best, Katarzyna