Which reference sequences should be used to RNA mapping

novoalab / EpiNano

Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)

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Which reference sequences should be used to RNA mapping #21

Closed huiWyuan closed 5 years ago

huiWyuan commented 5 years ago

Hi, Which reference sequences should be used to RNA mapping, genome reference or transcriptome reference ? For species without a reference genome, can I mapping RNA to an assembled transcriptome?