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novoalab / EpiNano

Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)
GNU General Public License v2.0
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Error encountered with trimming fastQ files #4

Closed amy1847 closed 5 years ago

amy1847 commented 5 years ago

Hi,

I'm trying to trim the raw fastq with NanoFilt and am using Ubuntu, pip3 and python 3.6.8. When I enter the command, I receive this error: cat: invalid option -- 'q'. Any suggestions as to how to overcome this?

Thanks!

Huanle commented 5 years ago

Hi @amy1847 , It seems to me that NanoFilt may not be in your current working directory (./NanoFilt). you can use a soft link to NanoFilt or add its location to the environmental path after having it installed. I can perhaps help more if you send me the complete command you used.

amy1847 commented 5 years ago

Hi @Huanle ,

I have a few new user questions just about the code in general. I emailed elzedliu@gmail.com a few days ago. Is that the correct email address?

Thanks!

Huanle commented 5 years ago

Hi @amy1847 , Yes. the email address is correct. But i haven't received any message from you. What is your email address?

Thanks!

amy1847 commented 5 years ago

Hi @Huanle,

My email address is adistiller@student.unimelb.edu.au.

If you search by that, you’ll find a few emails.

Thanks!