syntax error occur during Epinano_variants command use

novoalab / EpiNano

Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)

GNU General Public License v2.0

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syntax error occur during Epinano_variants command use #62

Closed aman21392 closed 3 years ago

aman21392 commented 3 years ago

python /home/apps/EpiNano/Epinano_Variants.py -t 70 -R /Drive4/ncRNA_cdna/Homo_sapiens.GRCh38.cdna_all.ncrna.fa -b E6.bam -s /home/apps/EpiNano/misc/sam2tsv.jar --type t File "/home/apps/EpiNano/Epinano_Variants.py", line 54 cmd_map = f"minimap2 -ax map-ont -t {ncpus} -k 5 --MD " \ ^ SyntaxError: invalid syntax

Please can you help me to solve this issue. Thanks in advance

Huanle commented 3 years ago

Hi @aman21392 ,

Sorry for the late response. have you solved it?

aman21392 commented 3 years ago

yes that problem solved. Thanks

yuxinPenny commented 3 years ago

How did you solve this issue? I came up with this error too.

aman21392 commented 3 years ago

you can use python3 instead of just python than your command.