search

novoalab / EpiNano

Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)
GNU General Public License v2.0
110 stars 31 forks source link

Added missing dependencies to run Epinano_Variant.py #74

Closed kxk302 closed 3 years ago

kxk302 commented 3 years ago

In order to run the command 'python3 Epinano_variant.py -h', I had to add the following dependencies to INSTALL.h file. Afterwards, the command 'python3 Epinano_variant.py -h' runs without erroring out on missing dependencies.

kxk302 commented 3 years ago

Hi @huanle I had to add the following to INSTALL.h file, to run the 'python3 Epinano_variant.py -h' successfully. It seems some dependencies were missing from the file.

pip install toolz==0.11.1 pip install fsspec==0.3.3 pip install cloudpickle==1.6.0

Huanle commented 3 years ago

interesting, i did not realize that. @kxk302 . if that's the case, let's merge.