StopIteration on Epinano_Variants

novoalab / EpiNano

Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)

GNU General Public License v2.0

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StopIteration on Epinano_Variants #91

Closed izl2 closed 3 years ago

izl2 commented 3 years ago

Hi!

I've seen that several other people have posted about this issue as well, but I am currently encountering a StopIteration message when I run Epinano_Variants.py.. I've verified that I have pandas, pysam, and dask, and I also tried running everything through a python virtual environment with no luck. Wondering if you've had luck with resolving this issue?

Thanks!

izl2 commented 3 years ago

Never mind, fixed the issue! It was a problem with my sam2tsv!