Closed JeremyQuo closed 2 years ago
I find the reason. In readme file , it said these two files can be generated by Epinano_Variants.
However , it just only generate per.site.files. Slide_Variants.py need to deal with it after Epinano_Variants like below,
python ../../misc/Slide_Variants.py ko.plus_strand.per.site.csv 5
And finally, we get it.
Hello, I am running some samples in test_data, and it comes some problems. Here is my command
python ../../Epinano_Variants.py -R ref.fa -b ko.bam -n 6 -T t -s ../../misc/sam2tsv.jar
And the log shows like,
koTMP already exists, will overwrite it
No error log and it seems like finished. But nothing generated by this cmd,although readme illustrated that it will generate xxx.var.csv and xxxx.5mer.csv.
Can you help me to solve it please? Thanks