nowittynamesleft / protein_function_description

Describing protein sets' functions with natural language.
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top-10 accuracy reduces after first epoch #1

Closed nowittynamesleft closed 2 years ago

nowittynamesleft commented 3 years ago

Initially, the "top-10" accuracy rises in the first epoch from initialization, but then goes down, even as loss is going down smoothly.

The top-10 accuracy that I have implemented is very generous: if any of the top-10 closest keyword vectors to a protein is within its annotated set, count that protein as "correct". Then calculate total_correct/total_proteins.

Several things to work on:

nowittynamesleft commented 2 years ago

not working on seqCLIP at the moment; focusing on seq2GO (codename subject to change)