Unknown scientific names in legacy IOPAN protist data


export const philippAssmyFixes2021 = [
  ["Acantostomella norvegica", "Acanthostomella norvegica"],
  ["Alexandrium minimum", "Alexandrium minutum"],
  ["Calcycomonas", "Calycomonas"],
  ["Chaetoceros brevipes", "Chaetoceros brevis"],
  ["Chaetoceros lorenzians", "Chaetoceros lorenzianus"],
  ["Chaetoceros socialis/radians", "Chaetoceros gelidus"],
  ["Chrysophycean", "Chrysophyceae"],
  ["Ciliophora a", "Ciliophora"],
  ["Coccolithales n.det", "Coccolithales"],
  ["Coccolithes", "Coccolithales"],
  ["Cocolithus pelagicus", "Coccolithus pelagicus"],
  ["Corethron cryophilum", "Corethron criophilum"],
  ["Dictiocha speculum", "Dictyocha speculum"],
  ["Dinobryon baltica", "Dinobryon balticum"],
  ["Dinohyceae", "Dinophyceae"],
  ["Dinophycean", "Dinophyceae"],
  ["Dinphyceae", "Dinophyceae"],
  ["Entomoneis kjellmanii var kariana", "Entomoneis kjellmanii var. kariana"],
  ["Fragilariopsis cylindrus/oceanica", "Fragilariopsis cylindrus"],
  ["Gymndinium arcticum", "Gymnodinium arcticum"],
  ["Gymndinium galeatum", "Gymnodinium galeatum"],
  ["Gymndinium gracilentum", "Gymnodinium gracilentum"],
  ["Gymndinium simplex", "Gymnodinium simplex"],
  ["Gyrodinium lahryma", "Gyrodinium lachryma"],
  ["Gyrodinium pinque", "Gyrodinium pingue"],
  ["Gyrodinium sp l:", "Gyrodinium"],
  ["Leegardiella sol", "Leegaardiella sol"],
  ["Leesardia elongata", "Lessardia elongata"],
  ["Lohmaniella oviformis", "Lohmanniella oviformis"],
  ["Navicula trigocephala", "Pinnularia trigonocephala"],
  ["Parafavela gigantea", "Parafavella gigantea"],
  ["Parafavela", "Parafavella"],
  ["Protoperidinium spfi", "Protoperidinium"],
  ["Pseudo-niotzschia pseudodelicatissima group", "Pseudo-nitzschia sp."],
  ["Ptychocyclis obtusa", "Ptychocylis obtusa"],
  ["Raphidiophyceae", "Raphidophyceae"],
  ["Scrippseilla trochoidea", "Scrippsiella trochoidea"],
  ["Strombidium spiralis", "Strombidium spirale"],
  ["Strombidinium", "Strombidium"],
  ["Telonemma subtilis", "Telonema subtile"],
  ["Thallasionema nitzschioides", "Thalassionema nitzschioides"],
  [
    "Thalassiosira antarctica/gravida",
    "Thalassiosira antarctica var. borealis"
  ],
  [
    "Thalassiosira antarctica/pacifica",
    "Thalassiosira antarctica var. borealis"
  ],
  [
    "Thalasiossira borealis var. antarctica",
    "Thalassiosira antarctica var. borealis"
  ],
  [
    "Thalassiosira borealis var. antarctica",
    "Thalassiosira antarctica var. borealis"
  ],
  ["Tintinidae", "Tintinnidae"],
  ["Tintinnpsis", "Tintinnopsis"],
  ["Tripos arcticum", "Tripos arcticus"]
];

Not found, with > 1 usage:


cat data/input/iopan/protist-biodiversity/log/error-taxonomy.txt | grep "Not accepted" | sort | uniq -cd | sort -rn
      3 { scientificName: 'Gymnodinium/Gyrodinium' } 'Not accepted in WoRMS/GBIF and no local match > 0.8 similarity'
      2 { scientificName: 'Tintinnus' } 'Not accepted name in WoRMS via GBIF API, other matches: ' 10 true [ 'Tintinnus' ]
      2 { scientificName: 'Strobilidium spiralis' } 'Not accepted name in WoRMS via GBIF API, other matches: ' 5 true [ 'Strobilidium spiralis' ]
      2 { scientificName: 'Leprotintinnopsis' } 'Not accepted in WoRMS/GBIF and no local match > 0.8 similarity'
      2 { scientificName: 'Contricibra' } 'Not accepted in WoRMS/GBIF and no local match > 0.8 similarity'

npolar / marine-db

Unknown scientific names in legacy IOPAN protist data #60