Open Deoyeh opened 1 year ago
Hi,
I have faced the same issue too:
Found GPU will run ProteinMPNN on GPU
Attempting pose: design_1_10
Struct with tag design_1_10 failed in 0 seconds with error: <class 'Exception'>
This happens when I specify the -seq_per_struct
flag.
My command was as follows:
~/apps/dl_binder_design/mpnn_fr/dl_interface_design.py -silent my_designs.silent -outsilent mpnn_passed_1.silent -seqs_per_struct 20 -temperature 0.0001
The above runs perfectly fine without specifying -seq_per_struct
.
Any help is appreciated.
Thanks, Akshay
PS: @Deoyeh to avoid the Skipping error
, delete the checkpoint and idx files before rerunning.
I am attempting to run the dl_interface_design.py tool on a set of designs I generated using RFdiffusion.
Attempting pose: test_binder_0
Struct with tag test_binder_0 failed in 0 seconds with error: <class 'IndexError'>
When I try to run the predict.py on the same file, I get
Test_binder_0 has already been processed. Skipping
Please can I get some help resolving this issue? Each pdb file only contain one sequence for the each peptide.