In the examples directly, there is a file design_ppi_0.pdb with chain A as all GLY and a protein target in chain B which would correspond to the output from RFdiffusion.
Do you have a script available that will run MPNN on chain A and then run alphafold on it afterwards? Or two separate scripts to achieve the same result?
My environment is fine and runs all of the example scripts so I am only seeking an RFdiffusion pipeline solution.
thank you
logan donaldson
21tesla
commented
10 months ago
In the examples directly, there is a file design_ppi_0.pdb with chain A as all GLY and a protein target in chain B which would correspond to the output from RFdiffusion.
Do you have a script available that will run MPNN on chain A and then run alphafold on it afterwards? Or two separate scripts to achieve the same result?
My environment is fine and runs all of the example scripts so I am only seeking an RFdiffusion pipeline solution. thank you logan donaldson