I was attempting to design a binder protein which had some fixed residues identities in a region. So I want to use this script to label this region. However, I still don't understand how to use it properly. In the help information, this scrip should have two options like --pdbdir --trbdir. Could you tell me what is the exact mean for these options. what does trb represent? In my understanding, maybe I should provide a expression like this "A41-40" to stand for the residues 41 and 40 in A chain which should be fixed in the design progress. I guess that maybe this script could add some phrase like "FIXED" into pdb files. Please help me, any suggestion is appreciate.
Hi @nrbennet
Best regards, Ning