Samtools is now on 1.15.1, but it's not as simple as just updating the container. It insists on running mpileup from bcftools rather than samtools, and the command line is a bit different. It'll need doing with more care than simply changing the Conda file (as I've just done and had to roll back).
Samtools is now on 1.15.1, but it's not as simple as just updating the container. It insists on running mpileup from bcftools rather than samtools, and the command line is a bit different. It'll need doing with more care than simply changing the Conda file (as I've just done and had to roll back).