Closed ugurdogrusoz closed 3 years ago
Harshrai3112
commented
4 years ago Hello @ugurdogrusoz I would like to on this project as i have good knowledge of graph algorithms and also implement many graph algorithms.But i have just started learning cytoscape.js. So can you guide me how can i move forward.
ugurdogrusoz
commented
4 years ago @Harshrai3112 You could start by doing the Cytsocape.js tutorials. Then looking into the implementation of graph algorithms such as centrality measures in Cytocape.js core. Finally read the mentioned paper in this issue.
Harshrai3112
commented
4 years ago @Harshrai3112 You could start by doing the Cytsocape.js tutorials. Then looking into the implementation of graph algorithms such as centrality measures in Cytocape.js core. Finally read the mentioned paper in this issue. Thank you for information.
mnv936
commented
4 years ago Hi @ugurdogrusoz I have shared my proposal with you via email, can you please review it.
Background
Cytoscape.js is a popular graph analysis and visualization library with many useful extension.
Goal
The goal of this project is to implement additional graph algorithms to construct a graph of interest from a set of nodes of interest. These is especially useful for a focused analysis of large graphs.
Among the algorithms to be implemented [1]:
[1] U. Dogrusoz, A. Cetintas, E. Demir, and O. Babur, "Algorithms for Effective Querying of Compound Graph-Based Pathway Databases", BMC Bioinformatics, 10:376, 2009.
Difficulty Level 3
This is a rather difficult project as it not only requires a good knowledge of Cytoscape.js and its extensions but also understanding graph algorithms and their implementations.
Skills
JavaScript, Cytoscape.js and its extension structure (essential) Experience with graph algorithms (nice to have)
Public Repository
Cytoscape.js
Potential Mentors
Ugur Dogrusoz
Contact
Ugur Dogrusoz