nservant
commented
4 years ago Hi, As explained in the error message, I think that numpy is not correclty installed. Could you try to install it again Thanks
Closed lanliting closed 4 years ago
nservant
commented
4 years ago Hi, As explained in the error message, I think that numpy is not correclty installed. Could you try to install it again Thanks
Hi， I got the following problem in iced normalization step, can you help me?
cat ice_40000.log ice --results_filename hic_results/matrix/NSD2-High-SRR9109486/iced/40000/NSD2-High-SRR9109486_40000_iced.matrix --filter_low_counts_perc 0.02 --filter_high_counts_perc 0 --max_iter 100 --eps 0.1 --remove-all-zeros-loci --output-bias 1 --verbose 1 hic_results/matrix//NSD2-High-SRR9109486/raw/40000/NSD2-High-SRR9109486_40000.matrix Traceback (most recent call last): File "/usr/bin/ice", line 8, in
import iced
File "/home/limoon/.local/lib/python2.7/site-packages/iced/init.py", line 1, in
from . import normalization
File "/home/limoon/.local/lib/python2.7/site-packages/iced/normalization.py", line 3, in
from .normalization import _update_normalization_csr
File "init.pxd", line 861, in init iced.normalization (iced/normalization.c:4673)
ValueError: numpy.ufunc has the wrong size, try recompiling. Expected 192, got 216