make: *** [hic_qc] Error 1

[DRosen1996]

Hello When I use HIC-PRO make: *** [hic_qc] Error 1 This error occurs when I run the software with my own data and test data，What is the general reason?

Is it about merge？

[nservant]

Hi Yes, there was an error at the merging step. I pretty sure this is a sort issue. Could you try to look into the log folder, any error message at this step ? N

[DRosen1996]

Hi Yes, there was an error at the merging step. I pretty sure this is a sort issue. Could you try to look into the log folder, any error message at this step ? N

Thank you for your reply. I found out that the reason for my previous error was that I didn't correct the "PAIR1_EXT" in the configuration file, but after the modification, the same problem still appears in the end.

config_test_latest.txt mergeSAM.log mapped_2hic_fragments.log：

plot_hic_contacts.Rout.txt plot_hic_fragment.Rout.txt plot_mapping_portion.Rout.txt plot_pairing_portion.Rout.txt

[DRosen1996]

I found error in plot_hic_contacts.Rout Error in read.table(file = file, header = header, sep = sep, quote = quote, : no lines available in input Calls: lapply -> FUN -> read.table Execution halted

[DRosen1996]

I've solved the problem that the names of my chromosomes don't match the reference genome