Hi,
Do you have the same if you start from raw data ?
The iced normalization usually removes low counts rows/columns. The threshold can be changed in the config.
But as cooler is able to normalize on the fly the data, I usually advice to convert the raw data into cool file.
N
Hi, Do you have the same if you start from raw data ? The iced normalization usually removes low counts rows/columns. The threshold can be changed in the config. But as cooler is able to normalize on the fly the data, I usually advice to convert the raw data into cool file. N