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nservant / HiC-Pro

HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
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Ice normalization failed #354

Closed AhlemBoudell closed 3 years ago

AhlemBoudell commented 4 years ago

Hi,

I have the following issue while running the 2nd step of hic-pro in our cluster: Logs: logs/CEC_4/ice_40000.log make: *** [ice_norm] Error 127

and in the log file, it says:

ice --results_filename hic_results/matrix/CEC_4/iced/40000/CEC_4_40000_iced.matrix --filter_low_counts_perc 0.02 --filter_high_counts_perc 0 --max_iter 100 --eps 0.1 --remove-all-zeros-loci --output-bias 1 --verbose 1 hic_results/matrix//CEC_4/raw/40000/CEC_4_40000.matrix /ibex/sw/csi/hic-pro/2.11.4/el7.7_python2.7/HiC-Pro_2.11.4/scripts/hic.inc.sh: line 86: ice: command not found

Any idea why is this the case?

nservant commented 4 years ago

It seems that the iced python package is not installed. Could you please install it and try again ?

AhlemBoudell commented 4 years ago

I was running it in our cluster when i got this error. I checked the ice package first and it was there so it didnt make sense. I am sunning the normalization stem locally and its working. Thanks for the input.

Ahlem