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nservant / HiC-Pro

HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
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No hic_results/data/ #355

Closed rob123king closed 4 years ago

rob123king commented 4 years ago

I've run this before and worked fine but on a new data set, I can't see why it keeps failing at the same point. The last log is mapping stats and I don't see any errors. It looks like the mapping stage worked fine. If I know where it is failing I could get into the script and trying running it on the command line and try to debug?

Mon Aug 17 20:16:58 BST 2020 Mapping statistics for R1 and R2 tags ... Logs: logs/fastq/mapping_stats.log

Mon Aug 17 20:51:21 BST 2020 Pairing of R1 and R2 tags ...

Mon Aug 17 20:51:22 BST 2020 Assign alignments to restriction fragments ...

Mon Aug 17 20:51:22 BST 2020 Merge chunks from the same sample ... find: `hic_results/data/': No such file or directory make: *** [merge_valid_interactions] Error 1

distilledchild commented 3 years ago

@rob123king How did you solve this problem? I encountered the same problems.