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nservant / HiC-Pro

HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
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Allele-specific - markAllelicStatus.py issue for HiC-Pro_2.11.4 #367

Closed StephF-1130 closed 3 years ago

StephF-1130 commented 4 years ago

markallelicstatus does not support compressed vcf files. I added this if ".gz" in in_file : import gzip vcf_handle = gzip.open( in_file, 'r') else: ... for this to work. Thanks

nservant commented 3 years ago

Thanks for your comment !

nservant commented 3 years ago

done in 3.0.0