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nservant / HiC-Pro

HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
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Run parallel HiC-Pro without a scheduler #370

Closed fanc-WU closed 3 years ago

fanc-WU commented 4 years ago

Hi~

Our lab has a powerful server with 20+ cores. However, we don't have a scheduler at all. I was wondering if parallel without a scheduler is supported. Thanks!!

nservant commented 4 years ago

Hi Not really, the only parallelized step is the mapping in this case. All downstream analysis steps will run on one CPU. If you have billions of reads, it will take time ... Best