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nservant / HiC-Pro

HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
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build_raw_maps error #384

Closed hilaryhy closed 3 years ago

hilaryhy commented 3 years ago

Hi, I run HiC-pro met the problem about build_raw_maps error, the mainly error is in "build_raw_maps.log" below:

Generate contact maps at 5000 resolution ...

cat hic_results/data//sample/sample.allValidPairs | /public/home/HiC-Pro_2.11.4/HiC-Pro_2.11.4/scripts/build_matrix --matrix-format upper --binsize 5000 --chrsizes /public/home/HiC-Pro_2.11.4/HiC-Pro_2.11.4/annotation/TAIR10.chrom.sizes --ifile /dev/stdin --oprefix hicresults/matrix/sample/raw/5000/sample${bsize} /public/home/HiC-Pro_2.11.4/HiC-Pro_2.11.4/scripts/build_matrix: /usr/lib64/libstdc++.so.6: version GLIBCXX_3.4.18' not found (required by /public/home/HiC-Pro_2.11.4/HiC-Pro_2.11.4/scripts/build_matrix) /public/home/HiC-Pro_2.11.4/HiC-Pro_2.11.4/scripts/build_matrix: /usr/lib64/libstdc++.so.6: versionCXXABI_1.3.5' not found (required by /public/home/HiC-Pro_2.11.4/HiC-Pro_2.11.4/scripts/build_matrix) cat: 写入错误: 断开的管道

I am so appreciated for your help!

nservant commented 3 years ago

Hi, Something is wrong with your gcc version I think, and the build_matrix code was not properly compiled and installed. You should fixe this before re-installing HiC-Pro N