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nservant / HiC-Pro

HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
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find: File System Loop Detected #398

Closed Jacobvazquez18 closed 3 years ago

Jacobvazquez18 commented 3 years ago

Hello, I'm trying to use HiC-Pro but running into an error with a file system loop. In the folder I'm in, it creates a folder called "hicpro_output" and there's a file with the config file I used and also another folder called "rawdata". However, if I click into "rawdata" folder, it's endless loop of the same content. Here is my code I ran and the error below:

HiC-Pro -i /home/helix2/Project/HiC/RenLab_Cortex/cortex/cortex_zip/ -o hicpro_output -c /home/helix2/Project/HiC/RenLab_Cortex/cortex/HiCPro/config-hicpro_mm10.txt

find: File system loop detected; ‘rawdata/hicpro_output/rawdata’ is part of the same file system loop as ‘rawdata’.

Jacobvazquez18 commented 3 years ago

Now, the error message isn't appearing but the program stops in not even a second and all I get is a folder in the directory I'm in with a new rawdata folder that contains the data I used for input.

nservant commented 3 years ago

Hi, Did you find the issue ? best