Open robeach78 opened 3 years ago
Hi, when I run the HiC-pro script I run into this error:
LANG=en; sort -T mp -k2,2V -k3,3n -k5,5V -k6,6n -o hic_results/data/sample1/HICHIP_PR5020_Franc_hg38.bwt2pairs.validPairs hic_results/data/sample1/HICHIP_PR5020_Franc_hg38.bwt2pairs.validPairs sort: cannot create temporary file in 'mp': No such file or directory.
But I have a tmp directory in my HiC-Pro folder.
and config files is ok I think:
#########################################################################
TMP_DIR = tmp LOGS_DIR = logs BOWTIE2_OUTPUT_DIR = bowtie_results MAPC_OUTPUT = hic_results RAW_DIR = rawdata
#######################################################################
####################################################################### N_CPU = 2 SORT_RAM = 1000M LOGFILE = hicpro.log
JOB_NAME = PR_T30Franc JOB_MEM = 10gb JOB_WALLTIME = 6:00:00 JOB_QUEUE = batch JOB_MAIL = roberto.ferrari@crg.es
Hi, when I run the HiC-pro script I run into this error:
Sorting valid interaction file ...
LANG=en; sort -T mp -k2,2V -k3,3n -k5,5V -k6,6n -o hic_results/data/sample1/HICHIP_PR5020_Franc_hg38.bwt2pairs.validPairs hic_results/data/sample1/HICHIP_PR5020_Franc_hg38.bwt2pairs.validPairs sort: cannot create temporary file in 'mp': No such file or directory.
But I have a tmp directory in my HiC-Pro folder.
and config files is ok I think:
Please change the variable settings below if necessary
#########################################################################
Paths and Settings - Do not edit !
#########################################################################
TMP_DIR = tmp LOGS_DIR = logs BOWTIE2_OUTPUT_DIR = bowtie_results MAPC_OUTPUT = hic_results RAW_DIR = rawdata
#######################################################################
SYSTEM AND SCHEDULER - Start Editing Here !!
####################################################################### N_CPU = 2 SORT_RAM = 1000M LOGFILE = hicpro.log
JOB_NAME = PR_T30Franc JOB_MEM = 10gb JOB_WALLTIME = 6:00:00 JOB_QUEUE = batch JOB_MAIL = roberto.ferrari@crg.es