nservant / HiC-Pro

HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
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error in sorting valid interactions #414

Open robeach78 opened 3 years ago

robeach78 commented 3 years ago

Hi, when I run the HiC-pro script I run into this error:

Sorting valid interaction file ...

LANG=en; sort -T mp -k2,2V -k3,3n -k5,5V -k6,6n -o hic_results/data/sample1/HICHIP_PR5020_Franc_hg38.bwt2pairs.validPairs hic_results/data/sample1/HICHIP_PR5020_Franc_hg38.bwt2pairs.validPairs sort: cannot create temporary file in 'mp': No such file or directory.

But I have a tmp directory in my HiC-Pro folder.

and config files is ok I think:

Please change the variable settings below if necessary

#########################################################################

Paths and Settings - Do not edit !

#########################################################################

TMP_DIR = tmp LOGS_DIR = logs BOWTIE2_OUTPUT_DIR = bowtie_results MAPC_OUTPUT = hic_results RAW_DIR = rawdata

#######################################################################

SYSTEM AND SCHEDULER - Start Editing Here !!

####################################################################### N_CPU = 2 SORT_RAM = 1000M LOGFILE = hicpro.log

JOB_NAME = PR_T30Franc JOB_MEM = 10gb JOB_WALLTIME = 6:00:00 JOB_QUEUE = batch JOB_MAIL = roberto.ferrari@crg.es