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nservant / HiC-Pro

HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
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Warning : Scheduler system not defined - Default is Torque/PBS #450

Closed ld9866 closed 3 years ago

ld9866 commented 3 years ago

make configure make -f ./scripts/install/Makefile CONFIG_SYS=./config-install.txt make[1]: Entering directory '/HiC-Pro_3.0.0' ./scripts/install/install_dependencies.sh -c ./config-install.txt -p /usr/local/bin/ -o /usr/local/bin//HiC-Pro_3.0.0 -q Make sure internet connection works for your shell prompt under current user's privilege ... Starting HiC-Pro installation ... Checking dependencies ... Checking Python libraries ... /usr/local/anaconda/envs/HiC-Pro_v3.0.0/lib/python3.7/site-packages/iced/normalization/_ca_utils.py:9: UserWarning: The API of this module is likely to change. Use only for testing purposes "The API of this module is likely to change. " The required Python libraries appear to be already installed. Checking R installation ... The required R packages appear to be already installed. Bowtie2 Aligner appears to be already installed. Samtools appears to be already installed. Dependencies checked ! Check HiC-Pro configuration ... Warning : Scheduler system not defined - Default is Torque/PBS Configuration for TORQUE/PBS system.

ld9866 commented 3 years ago

l am trying to install it through docker and conda, l ues ubuntu20.04 and l want to know how to solve it.

nservant commented 3 years ago

Hi, Could you explain me what is the issue here ? I do not see any error message ? N