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nservant / HiC-Pro

HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
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Error when using Dockerfile to create image #465

Closed gf0927 closed 3 years ago

gf0927 commented 3 years ago

I copied the latest Dockerfile and environment.yml tried create my own image , but it failed at (12/13) step .. I had successfully built the image in the previous version, so I guess the path in the new version has been change ?

Here's my error message :

make[1]: Leaving directory '/tmp/HiC-Pro-master' (g++ -Wall -O2 -std=c++0x -o build_matrix /tmp/HiC-Pro-master/scripts/src/build_matrix.cpp; mv build_matrix /tmp/HiC-Pro-master/scripts) (g++ -Wall -O2 -std=c++0x -o cutsite_trimming /tmp/HiC-Pro-master/scripts/src/cutsite_trimming.cpp; mv cutsite_trimming /tmp/HiC-Pro-master/scripts) realpath: /home/nservant/Apps//HiC-Pro_3.1.0: No such file or directory cp -Ri /tmp/HiC-Pro-master /home/nservant/Apps//HiC-Pro_3.1.0 cp: cannot create directory '/home/nservant/Apps//HiC-Pro_3.1.0': No such file or directory make: ** [Makefile:78: cp] Error 1 The command '/bin/sh -c cd /tmp && echo "master.zip" | wget --base=http://github.com/nservant/HiC-Pro/archive/ -i - -O hicpro_latest.zip && unzip hicpro_latest.zip && cd HiC-Pro-master && make configure prefix=/ && make install && cd .. && rm -fr HiC-Pro' returned a non-zero code: 2

nservant commented 3 years ago

Hi, Indeed, sorry, this is because I fixed the installation path in my home folder (in the config-install.txt file). I have just updated the devel and master branches. Of note, I didn't finish all the tests for the 3.1.0 ... I'll do it at the end of the month ! N

gf0927 commented 3 years ago

Thanks for efficiency ! I built it successfully !