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nservant / HiC-Pro

HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
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python digest_genome.py #466

Closed ld9866 closed 3 years ago

ld9866 commented 3 years ago

Hello! I'd like to ask a step about how to create a bed for the following steps. When l use this step "python digest_genome.py", l find l can not use MboI, you only said "The restriction enzymes HindIII, DpnII, BglII, and MboI are encoded within the script and are therefore recognized if specified to the program.", but the -r option can't work when l print mobi and it showed that: "Find unexpected character ['m']in restriction motif Note that multiple motifs should be separated by a space (not a comma !)" But when l print "-r ^GATC" it works successfully, is that ok or how can l use the -r option when the restriction enzymes is MboI? Thank you!

nservant commented 3 years ago

Hi Yes absolutly. This bug has been fixed in the later 3.1.0 version. If this is not the case, please let me know N

ld9866 commented 3 years ago

OK! Glad to receive your reply!