HiC-Pro available in the cloud ?

nservant / HiC-Pro

HiC-Pro: An optimized and flexible pipeline for Hi-C data processing

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HiC-Pro available in the cloud ? #468

Open tanasa opened 3 years ago

tanasa commented 3 years ago

Dear Nicolas,

is HiC-Pro available on any cloud platforms (GCP, AWS, DNA Nexus, Seven Bridges). Thanks a lot !

nservant commented 3 years ago

Hi @tanasa,

No, HiC-Pro is not available on the Cloud. However, I would suggest you to use the nf-core-hic pipeline which is the new HiC-Pro generation :) https://github.com/nf-core/hic

Currently, HiC-Pro and the nf-core-hic pipelines give very similar results, as it is 'just' a Nextlow implementation of HiC-Pro. But more analysis step will come in the next months. All nf-core pipelines are available on the cloud.

Best Nicolas