nservant / HiC-Pro

HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
Other
382 stars 183 forks source link

make configure ERROR #485

Closed rootze closed 2 years ago

rootze commented 2 years ago

Hello,

I was trying to install HiC-Pro on HPC. I have already made a Conda env, HiChiP, with all necessary dependencies and edited the config-install.txt.

(HiChiP) [zechuas@hpc3-l18-04 HiC-Pro-master]$ make configure
make -f ./scripts/install/Makefile CONFIG_SYS=./config-install.txt
make[1]: Entering directory '/dfs3b/swaruplab/zechuas/tools_software/HiChiP/HiC-Pro-master'
./scripts/install/install_dependencies.sh -c ./config-install.txt -p /dfs3b/swaruplab/zechuas/tools_software/HiChiP/HiC-Pro-master -o /dfs3b/swaruplab/zechuas/tools_software/HiChiP/HiC-Pro-master/HiC-Pro_3.1.0 -q
make[1]: ./scripts/install/install_dependencies.sh: Permission denied
make[1]: *** [scripts/install/Makefile:41: configure] Error 127
make[1]: Leaving directory '/dfs3b/swaruplab/zechuas/tools_software/HiChiP/HiC-Pro-master'
make: *** [Makefile:40: configure] Error 2

Please see my config-install.txt.

#########################################################################
## Paths and Settings  - Start editing here !
#########################################################################

PREFIX = /dfs3b/swaruplab/zechuas/tools_software/HiChiP/HiC-Pro-master
BOWTIE2_PATH = ~/.conda/envs/HiChiP/bin/
SAMTOOLS_PATH = /opt/apps/samtools/1.10/bin/
R_PATH = ~/.conda/envs/HiChiP/bin/
PYTHON_PATH = ~/.conda/envs/HiChiP/
CLUSTER_SYS = SLURM

Thank you so much for your help!

nservant commented 2 years ago

Hi, it seems that you do not have rigths to execute the sh files in the script/install ? Could you check that please ? N

rootze commented 2 years ago

Hi, it seems that you do not have rigths to execute the sh files in the script/install ? Could you check that please ? N

Thank you for your reply. I have solved this problem and I will close this issue. Thank you!