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nservant / HiC-Pro

HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
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cannot load hic file created from hicpro2juicebox.sh to juicebox #488

Closed SplitInf closed 2 years ago

SplitInf commented 2 years ago

Hi, I have used hicpro2juicebox.sh and juicer_tools_1.19.02.jar to convert allValidPairs from hicpro to hic file. The result binary file seems to be correct, e.g this works.:

java -jar juicer_tools_1.19.02.jar dump observed KR allValidPairs.hic 1:20480000:40960000 1:20480000:40960000 BP 10000 combined_10Kb.txt

but loading it to juicebox just result in a blank state. Am I missing something here?

Thanks!

SplitInf commented 2 years ago

Problem solved when using the development version of juicebox (1.11.08).