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nservant / HiC-Pro

HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
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hic_results can not found #516

Open ZhaoRanze opened 2 years ago

ZhaoRanze commented 2 years ago

****join: /tmp/hic1.27341:9: is not sorted: BUILD =x86_64-conda-linux-gnu join: /tmp/hic1.27341:19: is not sorted: BUILD =x86_64-conda-linux-gnu

Run HiC-Pro 3.1.0

Pairing of R1 and R2 tags ... join: /tmp/hic1.27412:19: is not sorted: BUILD =x86_64-conda-linux-gnu join: /tmp/hic1.27412:19: is not sorted: BUILD =x86_64-conda-linux-gnu Logs: logs/rep1/mergeSAM.log

Assign alignments to restriction fragments ... join: /tmp/hic1.27757:19: is not sorted: BUILD =x86_64-conda-linux-gnu join: /tmp/hic1.27757:19: is not sorted: BUILD =x86_64-conda-linux-gnu

Merge chunks from the same sample ... join: /tmp/hic1.27816:19: is not sorted: BUILD =x86_64-conda-linux-gnu join: /tmp/hic1.27816:19: is not sorted: BUILD =x86_64-conda-linux-gnu find: ‘hic_results/data/’: No such file or directory make: * [/30t/zhaorz/biosoft_bymyself/hicpro/bin/../scripts//Makefile:160: merge_valid_interactions] Error 1 and rep1_1.valid_aacc.bwt2merged.bam rep1_2.valid_aacc.bwt2merged.bam are exist and bowtie_results config-hicpro.txt logs rawdata tmp there are no hic_results and HiC-Pro -i bwt2/ -o out -c 1 -s proc_hic -s merge_persample this is my test code** BUT when i start at fa files ,i can get the all files I don't know what's going on....