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nservant / HiC-Pro

HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
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Error at the start of HiC-Pro: failed to create symbolic link #539

Open kaivalya-lgr opened 2 years ago

kaivalya-lgr commented 2 years ago

Hi I am getting this error when trying to run HiC-Pro ln: failed to create symbolic link '/home/kaivalyashevade/HiC-Pro/output//home/kaivalyashevade/HiC-Pro/fastq': No such file or directory

the input command I used is: bin/HiC-Pro -i /home/kaivalyashevade/HiC-Pro/fastq -o /home/kaivalyashevade/HiC-Pro/output -c config-hicpro.txt -s mapping

My raw data folder structure is as follows: fastq sample1 _R1.fastq.gz _R2.fastq.gz

Is there a solution to this error ?