Hi, I have a genome where regular mapping of data yields 60% multimapped reads. At first, I dealt with that by using HiC-Pro with the RM_MULTI = 0 option. Thank I discovered the special tool mHiC https://github.com/yezhengSTAT/mHiC. Have you ever compared the outcomes for the two options?
Thanks!
Hi, I have a genome where regular mapping of data yields 60% multimapped reads. At first, I dealt with that by using HiC-Pro with the RM_MULTI = 0 option. Thank I discovered the special tool mHiC https://github.com/yezhengSTAT/mHiC. Have you ever compared the outcomes for the two options? Thanks!