Hi!
I am trying to use HiC-Pro for some Hi-C data downloaded from NCBI-SRA. But I do not know the list of restriction fragments/enzymes(s) while sample INFO do not provide this.
But I see that while using HiC-Pro, _GENOMEFRAGMENT need to bed provided for data processing.
Is there any solution for my situation? Is there a great impact if I use the wrong restriction enzymes INFO for _digestgenome.py?
I do not know how to solve this problem except to ask the data uploaders.
Hi! I am trying to use HiC-Pro for some Hi-C data downloaded from NCBI-SRA. But I do not know the list of restriction fragments/enzymes(s) while sample INFO do not provide this. But I see that while using HiC-Pro, _GENOMEFRAGMENT need to bed provided for data processing.
Is there any solution for my situation? Is there a great impact if I use the wrong restriction enzymes INFO for _digestgenome.py? I do not know how to solve this problem except to ask the data uploaders.
Hope your reply sincerely! Best wishes!