hello!
I encountered the following problems when using HICPRO. I want to ask how I should modify it.
Installation steps:
`make configure
make -f ./scripts/install/Makefile CONFIG_SYS=./config-install.txt
make[1]: Entering directory '/home/lanmeifang/Hic-pro/HiC-Pro'
./scripts/install/install_dependencies.sh -c ./config-install.txt -p /home/lanmeifang/Hic-pro -o /home/lanmeifang/Hic-pro/HiC-Pro_3.1.0 -q
Make sure internet connection works for your shell prompt under current user's privilege ...
Starting HiC-Pro installation !
export /home/lanmeifang/bowtie2/bowtie2 in PATH
export /home/lanmeifang/samtools/bin/samtools in PATH
export /home/lanmeifang/anaconda3/envs/hicpro/bin/R in PATH
export /home/lanmeifang/anaconda3/envs/hicpro/bin/python in PATH
Checking dependencies
hello! I encountered the following problems when using HICPRO. I want to ask how I should modify it. Installation steps:
`make configure make -f ./scripts/install/Makefile CONFIG_SYS=./config-install.txt make[1]: Entering directory '/home/lanmeifang/Hic-pro/HiC-Pro' ./scripts/install/install_dependencies.sh -c ./config-install.txt -p /home/lanmeifang/Hic-pro -o /home/lanmeifang/Hic-pro/HiC-Pro_3.1.0 -q Make sure internet connection works for your shell prompt under current user's privilege ... Starting HiC-Pro installation ! export /home/lanmeifang/bowtie2/bowtie2 in PATH export /home/lanmeifang/samtools/bin/samtools in PATH export /home/lanmeifang/anaconda3/envs/hicpro/bin/R in PATH export /home/lanmeifang/anaconda3/envs/hicpro/bin/python in PATH Checking dependencies
make install (g++ -Wall -O2 -std=c++0x -o build_matrix /home/lanmeifang/Hic-pro/HiC-Pro/scripts/src/build_matrix.cpp; mv build_matrix /home/lanmeifang/Hic-pro/HiC-Pro/scripts) (g++ -Wall -O2 -std=c++0x -o cutsite_trimming /home/lanmeifang/Hic-pro/HiC-Pro/scripts/src/cutsite_trimming.cpp; mv cutsite_trimming /home/lanmeifang/Hic-pro/HiC-Pro/scripts) cp -Ri /home/lanmeifang/Hic-pro/HiC-Pro /home/lanmeifang/Hic-pro/HiC-Pro_3.1.0 HiC-Pro installed in /home/lanmeifang/Hic-pro/HiC-Pro_3.1.0 !
Software operation
/home/lanmeifang/Hic-pro/HiC-Pro_3.1.0/bin/HiC-Pro -c config-hicpro.txt -o analysis -i /data02/lanmeifang/smo04/hicpro/hic/ Run HiC-Pro 3.1.0 mkdir: missing operand Try 'mkdir --help' for more information. make: *** [/home/lanmeifang/Hic-pro/HiC-Pro_3.1.0/bin/../scripts//Makefile:75: configure] Error 1
Thank you very much.We look forward to your reply!