Hi,
I assembled the genome of an insect. Because the quality of HiC data was not very good, so when I directly processed HIC data through juicer+3ddna, it was difficult to obtain effective contig clustering results. So, I used HiC-Pro to filter my hiC data. And I got .allValidPairs file. Now , i want to use .allValidPairs file to obtain valid two-paired-ended hic-data in fastq format. Can you give me suggestion? Or what tools do you recommend?
Thanks,
Best wishes to you.
Qiang Lyu, Shandong First Medical University,China.
Hi, I assembled the genome of an insect. Because the quality of HiC data was not very good, so when I directly processed HIC data through juicer+3ddna, it was difficult to obtain effective contig clustering results. So, I used HiC-Pro to filter my hiC data. And I got .allValidPairs file. Now , i want to use .allValidPairs file to obtain valid two-paired-ended hic-data in fastq format. Can you give me suggestion? Or what tools do you recommend? Thanks, Best wishes to you. Qiang Lyu, Shandong First Medical University,China.