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nservant / HiC-Pro

HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
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Warning : Matrix not found at XXX resolution #584

Open moxqiang opened 1 year ago

moxqiang commented 1 year ago

Dear all: I just want to run ice_norm，but I meet this Warning

`Run HiC-Pro 3.1.0

Fri Jul 7 15:42:19 CST 2023 Run ICE Normalization ... Logs: logs/1000000/ice_1000000.log Warning : Matrix not found at 1000000 resolution in rawdata/1000000 - skip`

my bed file : chrM 0 16569 1 chr1 0 1000000 2 chr1 1000000 2000000 3 chr1 2000000 3000000 4 chr1 3000000 4000000 5 chr1 4000000 5000000 6 chr1 5000000 6000000 7 chr1 6000000 7000000 8 chr1 7000000 8000000 9 chr1 8000000 9000000 10 chr1 9000000 10000000 11

matrix file: 0 0 1 0 1 544 0 3 1 0 22 1 0 53 1 0 54 1 0 56 1 0 62 1 0 69 1 0 87 1

config file: #######################################################################

Contact Maps

#######################################################################

BIN_SIZE = 1000000 MATRIX_FORMAT = complete

#######################################################################

Normalization

####################################################################### MAX_ITER = 100 FILTER_LOW_COUNT_PERC = 0.02 FILTER_HIGH_COUNT_PERC = 0 EPS = 0.1

my sh: /public/home/qqfu/software/HiC-Pro/hicpro/HiC-Pro_3.1.0/bin/HiC-Pro -i /public/home/qqfu/data/HPV/PCA/test_ice/output/hic_results/matrix/ \ -o /public/home/qqfu/data/HPV/PCA/test_ice/output/ \ -c /public/home/qqfu/data/HPV/PCA/test_ice/config-hicpro.txt \ -s ice_norm

Does anyone know how to go about solving this problem? Thanks!

moxqiang commented 1 year ago

Use other methods to complete the same operation

just use ice