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nservant / HiC-Pro

HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
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Installation error #592

Open ratheraarif opened 9 months ago

ratheraarif commented 9 months ago

I tried installing HiC--Pro and got the following error

(g++ -Wall -O2 -std=c++0x -o build_matrix /Users/arif/Downloads/HiC-Pro/scripts/src/build_matrix.cpp; mv build_matrix /Users/arif/Downloads/HiC-Pro/scripts) /Users/arif/Downloads/HiC-Pro/scripts/src/build_matrix.cpp:249:7: warning: private field 'idx' is not used [-Wunused-private-field] int idx; // really needed ? ^ 1 warning generated. (g++ -Wall -O2 -std=c++0x -o cutsite_trimming /Users/arif/Downloads/HiC-Pro/scripts/src/cutsite_trimming.cpp; mv cutsite_trimming /Users/arif/Downloads/HiC-Pro/scripts) make: realpath: Command not found cp -Ri /Users/arif/Downloads/HiC-Pro /Users/arif/Applications/HiC-Pro_3.1.0 HiC-Pro installed in ! (base) arif@Arifs-MBP HiC-Pro %

The configure-install file has the following content and everything else is installed properly..

PREFIX = /Users/arif/Applications BOWTIE2_PATH = /opt/homebrew/bin/bowtie2 SAMTOOLS_PATH = /opt/homebrew/bin/samtools R_PATH = /usr/local/bin/r PYTHON_PATH =/Users/arif/miniforge3/bin/python CLUSTER_SYS = TORQUE

Please help