I attempted to install HicPro to use it. I tried it before, but the versions of the programs were mixed up.
So after reinstalling, I am using python3.9 and python library using anaconda.
But even if I try this again, an error appears.
(python39) :~/HiC-Pro$ make configure
make -f ./scripts/install/Makefile CONFIG_SYS=./config-install.txt
make[1]: Entering directory '//HiC-Pro'
./scripts/install/install_dependencies.sh -c ./config-install.txt -p /usr/local/bin/ -o /usr/local/bin//HiC-Pro_3.1.0 -q
Make sure internet connection works for your shell prompt under current user's privilege ...
Starting HiC-Pro installation !
export //anaconda3/bin/bowtie2 in PATH
export /usr/bin/samtools in PATH
export /usr/bin/R in PATH
export //anaconda3/bin/python in PATH
Checking dependencies
Python libraries ...
Can not proceed without the required Python libraries, please install them and re-run
make[1]: [scripts/install/Makefile:41: configure] Error 1
make[1]: Leaving directory '//HiC-Pro'
make: [Makefile:40: configure] Error 2
Below is a list of currently installed python libraries.
All libraries in check_pythonlib.py are installed.
I attempted to install HicPro to use it. I tried it before, but the versions of the programs were mixed up. So after reinstalling, I am using python3.9 and python library using anaconda. But even if I try this again, an error appears.
(python39) :~/HiC-Pro$ make configure make -f ./scripts/install/Makefile CONFIG_SYS=./config-install.txt make[1]: Entering directory '//HiC-Pro' ./scripts/install/install_dependencies.sh -c ./config-install.txt -p /usr/local/bin/ -o /usr/local/bin//HiC-Pro_3.1.0 -q Make sure internet connection works for your shell prompt under current user's privilege ... Starting HiC-Pro installation ! export //anaconda3/bin/bowtie2 in PATH export /usr/bin/samtools in PATH export /usr/bin/R in PATH export //anaconda3/bin/python in PATH Checking dependencies
Below is a list of currently installed python libraries. All libraries in check_pythonlib.py are installed.
asciitree 0.3.3 attrs 23.1.0 biopython 1.81 bx 0.3.0 bx-python 0.10.0 cooler 0.9.3 Cython 3.0.2 iced 0.5.4 networkx 3.1 nose 1.3.7 numpy 1.25.2 packaging 23.1 pandas 2.1.0 pypairix 0.3.7 pysam 0.21.0 scipy 1.11.2 setuptools 68.0.0 torch 2.0.1 tornado 6.3.3 wheel 0.38.4