nservant / HiC-Pro

HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
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make configure error - python libraries #595

Open hwamu opened 9 months ago

hwamu commented 9 months ago

I attempted to install HicPro to use it. I tried it before, but the versions of the programs were mixed up. So after reinstalling, I am using python3.9 and python library using anaconda. But even if I try this again, an error appears.

(python39) :~/HiC-Pro$ make configure make -f ./scripts/install/Makefile CONFIG_SYS=./config-install.txt make[1]: Entering directory '//HiC-Pro' ./scripts/install/install_dependencies.sh -c ./config-install.txt -p /usr/local/bin/ -o /usr/local/bin//HiC-Pro_3.1.0 -q Make sure internet connection works for your shell prompt under current user's privilege ... Starting HiC-Pro installation ! export //anaconda3/bin/bowtie2 in PATH export /usr/bin/samtools in PATH export /usr/bin/R in PATH export //anaconda3/bin/python in PATH Checking dependencies

Below is a list of currently installed python libraries. All libraries in check_pythonlib.py are installed.

asciitree 0.3.3 attrs 23.1.0 biopython 1.81 bx 0.3.0 bx-python 0.10.0 cooler 0.9.3 Cython 3.0.2 iced 0.5.4 networkx 3.1 nose 1.3.7 numpy 1.25.2 packaging 23.1 pandas 2.1.0 pypairix 0.3.7 pysam 0.21.0 scipy 1.11.2 setuptools 68.0.0 torch 2.0.1 tornado 6.3.3 wheel 0.38.4

Blosers commented 3 months ago

您好,我也遇到了同样的问题,请问您是怎么解决的?如果您已经解决该问题,请您不吝赐教,谢谢。