Make: *** [HiC-Pro_3.1.0/bin/../scripts//Makefile:181: hic_qc] Error 1

[Oksanak22]

Hello,

I try to run a HiC-Pro as well and I got this HiC-Pro_3.1.0/bin/../scripts//Makefile:181: hic_qc] Error 1

And in plot_mapping_portion.Rout i have this.

####################################

plotMappingPortion.R

####################################

Get Mapping stat files for all fastq files of a given sample

allmapstat_r1 <- list.files(path=bwtDir, pattern=paste0("^[[:print:]]",r1tag,"[[:print:]]\.mapstat$"), full.names=TRUE) allmapstat_r2 <- list.files(path=bwtDir, pattern=paste0("^[[:print:]]",r2tag,"[[:print:]]\.mapstat$"), full.names=TRUE) stopifnot(length(allmapstat_r1)>0 && length(allmapstat_r2)>0) Error: length(allmapstat_r1) > 0 && length(allmapstat_r2) > 0 is not TRUE Execution halted

Is there any ideas how I can fix my issue?

My chrom.size look like this: Chr11_5B 14616 Chr11_5A 32090 Chr11_core 4641016 Chr11_3A 1073038 Chr11_3B 904836 Chr10_5A 59009 Chr10_5B 76642 Chr10_core 4026651 Chr10_3A 1616207 Chr10_3B 966995 Chr9_5A 336937 Chr9_5B 101244

And HindIII_resfrag.bed

Chr11_5B 0 825 Chr11_5B 825 7700 Chr11_5B 7700 10734 Chr11_5B 10734 11554 Chr11_5B 11554 12994 Chr11_5B 12994 14616 Chr11_5A 0 12393 Chr11_5A 12393 13338 Chr11_5Av9 13338 16379 Chr11_5A 16379 24679 Chr11_5A 24679 28382 Chr11_5A 28382 32090 Chr11_core 0 4299 Chr11_core 4299 7343 Chr11_core 7343 11009 Chr11_core 11009 15627 Chr11_core 15627 18200

Thank you.