Open AlcaArctica opened 7 months ago
Hi, have you solved this? I have the similiar problem
nope, unfortunately not.
I solved this but I am not sure the problem I encountered was as same as yours.
I am afraid that this is still a problem of PATH. Perhaps try to move all your files (including config-system.txt) to the directory where you run Hi-C Pro. And you might need to have a look at config-system.txt too.
I am not sure, what is going on here. This is the first time I am trying to run hic-pro, so it might be a set-up issue? I am running:
/lustre/projects/dazzler/uelze/sw/HiC-Pro/bin/HiC-Pro -i /lustre/projects/dazzlerAssembly/asm_vpTaxBacc_BK34-6/hic/hic_pro/hic_data/ -o /lustre/projects/dazzlerAssembly/asm_vpTaxBacc_BK34-6/hic/hic_pro/test -c /lustre/projects/dazzler/uelze/pipelines/hifi_snake/config_hicpro.txt -s mapping
and the only ouput I get is:
make: *** No targets. Stop.
I am pretty sure I have the input folder set up right:
so that should be fine. Then there is the config file:
Which I think I filled in correctly? So what is causing the error?