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nservant / HiC-Pro

HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
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merge allValidPairs and convert to .hic #614

Closed mw18f closed 10 months ago

mw18f commented 10 months ago

Hi nservant,

Can I use cat to merge biological replicates of allValidPairs and then convert to .hic by hicpro2juicebox.sh ? Thanks

nservant commented 10 months ago

yes of course.

shRDJr commented 2 months ago

Hi nservant, I want to ask, do biological replicates always merge in this way? That is, build the *.allValidPairs file and then use cat?

nservant commented 2 months ago

you can also sum the contact maps

shRDJr commented 2 months ago

you can also sum the contact maps

Thank you!