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nservant / HiC-Pro

HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
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hicpro2juicebox.sh not work for nextflow pipe https://github.com/nservant/nf-core-hic/tree/master #625

Open XuewenWangUGA opened 8 months ago

XuewenWangUGA commented 8 months ago

hicpro2juicebox.sh not work for the nextflow pipe https://nf-co.re/hic/2.1.0/docs/usage

The issue is the field number doesn't match.

The compressed validate pairs data have only 7 fields while the hicpro2juicebox.sh expects 8 fields. Could you give any suggestions on how to change the code in hicpro2juicebox.sh?

Do you think the 7 fields data are enough to convert it to .hic?

Thanks.